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What is the correct order in which the following proteins are recruited during DNA double-strand break repair in prokaryotes?
Question

What is the correct order in which the following proteins are recruited during DNA double-strand break repair in prokaryotes?

A.

RecA, RecBCD, Ssb, DNA Pol III, DNA Ligase

B.

Ssb, RecA, RecBCD, DNA Pol III, DNA Ligase

C.

RecBCD, RecA, Ssb, DNA Pol III, DNA Ligase

D.

RecBCD, Ssb, RecA, DNA Pol III, DNA Ligase

Correct option is D

Double-strand break repair (DSBR) in prokaryotes primarily occurs through homologous recombination. The stepwise recruitment of proteins follows this sequence:

  1. RecBCD Complex Initiation (First Step)

    • RecBCD is a helicase-exonuclease complex that binds to the DNA break site and starts end resection.
    • It unwinds the DNA and generates 3′ single-stranded DNA (ssDNA) overhangs required for homologous recombination.
  2. Ssb Binding (Second Step)

    • Single-strand binding protein (Ssb) coats the newly formed ssDNA to stabilize it and prevent secondary structures.
  3. RecA Loading (Third Step)

    • RecA protein replaces Ssb on ssDNA and forms a nucleoprotein filament, which is crucial for strand invasion into a homologous DNA sequence.
  4. DNA Polymerase III Activity (Fourth Step)

    • DNA Pol III synthesizes new DNA to replace the degraded or damaged strand using the invaded homologous sequence as a template.
  5. DNA Ligase Sealing (Final Step)

    • DNA Ligase seals the nicks in the sugar-phosphate backbone, completing the repair process.

Information Booster

  1. RecBCD Complex:

    • Functions as a helicase-exonuclease.
    • Generates ssDNA overhangs required for recombination.
    • Regulated by the Chi (χ) sequence, which influences RecA loading.
  2. Ssb (Single-Strand Binding Protein):

    • Binds to single-stranded DNA and prevents degradation.
    • Facilitates RecA filament formation.
  3. RecA:

    • Facilitates homologous strand invasion into an intact DNA molecule.
    • Forms a nucleoprotein filament for recombination.
  4. DNA Polymerase III:

    • Fills in the missing DNA sequence using the homologous strand as a template.
  5. DNA Ligase:

    • Seals the final nicks, completing DNA repair.
  6. Significance of DSBR:

    • Prevents mutations and chromosomal rearrangements.
    • Essential for genome stability in bacteria.
  7. Role in Antibiotic Resistance:

    • Homologous recombination-based repair can integrate foreign DNA, contributing to bacterial evolution and resistance mechanisms.

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