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    ​The Ramachandran plot graphically shows which combination of torsional angles phi (φ) and psi (ψ) of amino acid residues contained in a peptide are p
    Question

    The Ramachandran plot graphically shows which combination of torsional angles phi (φ) and psi (ψ) of amino acid residues contained in a peptide are possible. Examination of the plot below shows that only certain regions of the conformational space are permissible.

    Why are all the theoretical combinations of φ and ψ not possible?

    A.

    Two atoms cannot occupy the same space

    B.

    The geometry of the peptide bond that links two amino acid residues restricts φ and ψ angles

    C.

    Beta sheets and alpha helices determine the allowed regions of conformational space

    D.

    The tertiary fold of polypeptides restricts conformational space

    Correct option is A

    Explanation-

    The Ramachandran plot shows which combinations of backbone torsional angles φ and ψ are allowed for an amino acid residue in a protein.
    Correct Reason: Steric Hindrance
    "Two atoms cannot occupy the same space" — this is a fundamental principle of chemistry and physics, known as the Pauli exclusion principle and steric hindrance.
    Each amino acid in a polypeptide has atoms that take up space. When φ and ψ angles are rotated into certain positions, atoms may clash or come too close to each other. Such combinations are energetically unfavorable or physically impossible.
    Therefore, only specific combinations of φ and ψ allow enough space between atoms — and these combinations are shown as allowed regions on the Ramachandran plot (like beta-sheets, right-handed alpha helices, etc.)

    Incorrect Option -
    Option b: The geometry of the peptide bond is planar, but that alone doesn’t explain why all φ and ψ combinations are restricted — steric clashes are the main reason.
    Option c: Beta sheets and alpha helices occupy allowed regions, but they don’t define the allowed space — it's the steric constraints that define it.
    Option d: Tertiary folding happens after the local φ and ψ angles are set — it doesn’t determine their basic allowed values.

    Final Answer:
    Option a — "Two atoms cannot occupy the same space."

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