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    ​The circular dichroism spectra for near –UV and fa-UV regions of a polypeptide chain are given below:​​Which one of the following options represents
    Question

    The circular dichroism spectra for near –UV and fa-UV regions of a polypeptide chain are given below:

    Which one of the following options represents a correct inference about the polypeptide fold based on the above data?

    A.

    It contains only β sheets.

    B.

    It has to be an alternate α/β fold.

    C.

    It has to be a mixed α+β fold.

    D.

    It belongs to either alternate α/β or mixed α+β fold.

    Correct option is D

    To interpret the polypeptide fold from the circular dichroism (CD) spectra, we need to examine both:

    • Far-UV CD spectrum (left graph): Provides information on secondary structure.

    • Near-UV CD spectrum (right graph): Provides information on tertiary structure and environment of aromatic residues.

    Far-UV CD (195–250 nm):

    • Shows a broad negative band near 218 nm, and a positive band near 195 nm.

    • This pattern is typical of β-sheet structure.

    • α-helix would show double minima at ~208 nm and ~222 nm — not observed here.

     So the secondary structure is predominantly β-sheet.

    Near-UV CD (250–320 nm):

    • Shows distinct signals, especially between 270–290 nm, indicating:

      • Well-packed tertiary structure

      • Aromatic side chains (like Tyr, Trp, Phe) are in an ordered, asymmetric environment

    • This suggests a stable 3D fold, often seen in proteins with both α and β domains, or complex tertiary folds.

    Interpretation of options:

    1. It contains only β-sheets
       Too strict. Near-UV data implies more complex folding.

    2. It has to be an alternate α/β fold
       No α-helix evidence in far-UV. This needs alternating α-helix and β-sheet — not supported here.

    3. It has to be a mixed α+β fold
       No α-helix in the far-UV spectrum — again, ruled out.

    4. It belongs to either alternate α/β or mixed α+β fold
      This is the most inclusive and correct answer, considering:

      • Far-UV: Strong β-sheet signal

      • Near-UV: Structured tertiary fold, suggesting potential for both α and β regions

      • Could be a mixed fold or α/β arrangement that’s not fully evident in far-UV due to weak α content

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