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​A circular dichroism spectrum in the far-UV region informs on the kind and content of secondary structures in a protein. Near-UV and tryptophan emiss
Question

A circular dichroism spectrum in the far-UV region informs on the kind and content of secondary structures in a protein. Near-UV and tryptophan emission spectra inform on the tertiary structure. Shown in the panels above are (A) Intrinsic fluorescence emission spectra of protein 'X', (B) Far-UV CD spectra of protein 'X', (C) Near-UV CD spectra of protein 'X' recorded under different conditions.
Curves represent the spectra of protein 'X' at pH 7.0 (black), pH 3.0 (green), and pH 7.0 in the presence of 6.0 M guanidine hydrochloride (red).
What does the experiment report?

A.

Protein is fully folded at pH 7.0, acid-induced molten globule at pH 3.0 and unfolded in 6M guanidine hydrochloride.

B.

Protein secondary structure is reduced at pH 7.0 and the protein has formed beta fibrils at the other two conditions.

C.

The changes in fluorescence and near-UV CD indicate increase in hydrodynamic radius at pH 3.0 and in 6M guanidine hydrochloride.

D.

There is extensive denaturation of the protein both at pH 3.0 and in 6M guanidine hydrochloride.

Correct option is A

Explanation-

Experimental Setup Summary:
The three conditions being compared for protein 'X':
                               1.   Black: pH 7.0 → normal condition
                               2.   Green: pH 3.0 → acidic
                               3.   Red: pH 7.0 + 6 M guanidine hydrochloride → denaturing condition

Panel A: Intrinsic Fluorescence (Tertiary Structure)
Fluorescence emission max for tryptophan:
                    327 nm (black) = buried in hydrophobic core → compact/folded
                    340 nm (green) = partial exposure → partially unfolded (molten globule)
                        350 nm (red) = fully exposed → unfolded
Interpretation: At pH 7.0, protein is folded.
                        At pH 3.0, partial unfolding → molten globule state.
                        With guanidine, fully unfolded.
Panel B: Far-UV CD (Secondary Structure)
          Strong signals at pH 7.0 (black) → high secondary structure content.
          Moderate signal at pH 3.0 (green) → partial structure.
          Very low/flat signal with guanidine (red) → loss of secondary structure.
Interpretation:
          Secondary structure intact at pH 7.0 , reduced at pH 3.0, destroyed with guanidine.
Panel C: Near-UV CD (Tertiary Structure)
           Black (pH 7.0) → clear signal = well-packed tertiary structure.
           Green (pH 3.0) → flat = molten globule, tertiary structure lost.
           Red (guanidine) → flat = fully unfolded.
Interpretation:
           Tertiary structure intact at pH 7.0 , disrupted at pH 3.0 and with guanidine.

Correct Answer: Option a - “Protein is fully folded at pH 7.0, acid-induced molten globule at pH 3.0 and unfolded in 6M guanidine hydrochloride.
  Fluorescence: 327 → 340 → 350 nm (increasing exposure)
  Far-UV CD: high → reduced → minimal (secondary structure loss)
  Near-UV CD: intact → lost → lost (tertiary structure loss)

Incorrect options-
Option b: Says secondary structure is reduced at pH 7.0 — false, it's highest at pH 7.0.
Option c: Talks about hydrodynamic radius — not measured in this experiment.
Option d: Says extensive denaturation at both pH 3.0 and guanidine — wrong, pH 3.0 causes partial unfolding, not full.

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